Prof. Dr. rer. nat. Markus Egert
Fakultät Medical and Life Sciences
Prodekan für Lehre Studiendekan Molekulare und Technische Medizin (MTZ) Lehrbeauftragter für Mikrobiologie an der Hochschule für Forstwirtschaft Rottenburg (seit WS 2012/13)
Telefon: 07720 307-4554
Fax: 07720 307-4725
Campus Villingen-Schwenningen, Raum N 11.02

Sprechzeiten:

Während der Vorlesungszeit: Donnerstag, 11:30-13:30 Uhr
In der vorlesungsfreien Zeit: nach Vereinbarung

Lehrgebiete:

  • Angewandte Mikrobiologie 
  • Molekulare Mikrobiologie 
  • Körper-, Haushalts- und Betriebshygiene  
  • Diagnostik von Mikroorganismen 
  • Analyse mikrobieller Gemeinschaften 

Forschungsprojekte:

  • seit 2012: mehrere F&E-Industriekooperationen im Themenfeld "Mikrobiologie und Hygiene"
  • 2012-2014: "Projekt Lipid-SIP: Einsatz der SIP-Technologie zur Identifizierung Lipide-verstoffwechselnder Mikroorganismen im humanen Verdauungstrakt”. Mobilitätsunterstützung für einen Wissenschaftleraustausch zwischen der AgResearch Ltd., Palmerston North, Neuseeland und der HFU, gefördert durch die Bundesanstalt für Landwirtschaft und Ernährung (FKZ 01/12-13 NZL) und den neuseeländischen AGMART-Fund (Grant 1273)
  • 2013-15: “Projekt Präbio-SIP: Identifizierung Präbiotika-verstoffwechselnder Mikroorganismen im Verdauungstrakt von Mäusen mittels stabiler Isotopenbeprobung von Nukleinsäuren“. Förderung im Rahmen des Programms „Innovative Projekte / Kooperationsprojekte“ des Landes Baden-Württemberg
  • 2016-2019: "Projekt immENS: Interaktion von Mikrobiom, Motilität und Darmnervensystem (ENS) im Gastrointestinaltrakt. Förderung im Rahmen des Programms Forschung an Fachhochschulen in der Förderlinie FHprofUnt unter FKZ 03FH036PB5.

Beruflicher Werdegang:

  • geboren 1972 in Göttingen, verheiratet, 3 Kinder 
  • Geoökologie- und Biologie-Studium (Diplom) an der Universität Karlsruhe (1992-2000) 
  • Stipendiat der Studienstiftung des Deutschen Volkes 
  • Promotion und anschließender Post-Doc Aufenthalt am Max-Planck-Institut für Terrestrische Mikrobiologie, Marburg (2000-2004) 
  • Post-Doc Aufenthalt am Wageningen Centre for Food Sciences / Labor für Mikrobiologie der Universität Wageningen, NL (2004-2006) 
  • Laborleiter bei der Henkel AG & Co KGaA, Düsseldorf und Hamburg (2006-2010) 
  • Professor für Bioanalytik an der Hochschule Coburg (2010-2011) 
  • Professor für Mikrobiologie an der HFU (seit 2011) 

 

 

Publikationen

Markus Egert

2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001

2017

Wayne Dawson, Jens Hör, Markus Egert, Mark van Kleunen, Michael Pester A small number of low-abundance bacteria dominate plant species-specific responses during rhizosphere colonisation
Elena Herrmann, Wayne Young, Douglas Rosendale, Ralf Conrad, Christian U. Riedel, Markus Egert Determination of Resistant Starch Assimilating Bacteria in Fecal Samples of Mice by In vitro RNA-Based Stable Isotope Probing
Severin Weis, Elena Herrmann, Christian U. Riedel, Wayne Young, Sylvia Schnell, Markus Egert Effect of rotor type and formamide concentration on the separation of isotope-labeled and unlabeled Escherichia coli RNA by isopycnic density ultracentrifugation
Elena Herrmann, Patrick Koch, Christian U. Riedel, Wayne Young, Markus Egert Effect of rotor type on the separation of isotope-labeled and unlabeled Escherichia coli RNA by isopycnic density ultracentrifugation
Massimiliano Cardinale, Dominik Kaiser, Tillmann Lüders, Sylvia Schnell, Markus Egert Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species
Markus Egert More than skin-deep: a concise overview of the role of the skin microbiota in human health and disease
Christoph König, Stephanie Tauchnitz, Heike Kunzelmann, Christian Horn, Frithjof Blessing, Matthias Kohl, Markus Egert Quantification and identification of aerobic bacteria in holy water samples from a German environment
Elena Herrmann, Wayne Young, Douglas Rosendale, Verena Reichert-Grimm, Christian U. Riedel, Ralf Conrad, Markus Egert RNA-Based Stable Isotope Probing Suggests Allobaculum spp. as Particularly Active Glucose Assimilators in a Complex Murine Microbiota Cultured In Vitro
Markus Egert The BE-Microbiome – Communities with Relevance for Laundry and Home Care
Markus Egert, Rainer Simmering, Christian U. Riedel The association of the skin microbiota with health, immunity and disease
Massimiliano Cardinale, Dominik Kaiser, Tillmann Lüders, Sylvia Schnell, Markus Egert When cleaning makes things worse: microbiome analysis reveals a dominance of potentially pathogenic bacteria in used kitchen sponges

2016

Anne Jenner, Christian Lappe, Achim Zehender, Christian Horn, Frithjof Blessing, Matthias Kohl, Markus Egert A view to a kill? – ambient bacterial load of frames and lenses of spectacles and evaluation of different cleaning methods
Markus Egert Analysis of Microbial Communities Relevant to Laundry & Home Care
Elena Herrmann, Wayne Young, Verena Grimm, Christian U. Riedel, Peter Claus, Ralf Conrad, Markus Egert Identifizierung von präbiotika-fermentierenden Bakterien im Verdauungs-Trakt von Mäusen mittels rna-basierter stabiler Isotopenbeprobung (RNA-SIP)
Elena Herrmann, Wayne Young, Douglas Rosendale, Verena Grimm, Christian U. Riedel, Peter Claus, Ralf Conrad, Markus Egert RNA-based stable isotope probing of resistant starch degrading bacteria from the digestive tract of mice
Markus Egert, Rainer Simmering The Microbiota of the Human Skin
Massimiliano Cardinale, Dominik Kaiser, Marita Eckert, Franziska Kanz, Julia Kuhrau, Tillmann Lüders, Sylvia Schnell, Markus Egert When cleaning makes things worse: pyrosequencing and confocal microscopy analysis of bacterial communities in used kitchen sponges

2015

Markus Egert, Kerstin Späth, Karoline Weik, Heike Kunzelmann, Christian Horn, Matthias Kohl, Frithjof Blessing Bacteria on smartphone touchscreens in a German university setting and evaluation of two popular cleaning methods using commercially available cleaning products
Wayne Young, Markus Egert, Shalome A. Bassett, Rodrigo Bibiloni Detection of sialic acid-utilising bacteria in a caecal community in culture using RNA-based stable isotope probing
Wayne Young, Markus Egert, Shalome A. Bassett, Rodrigo Biblioni Finding the “brain bugs” - Identification of sialic acid-utilising bacteria in a piglet caecal community by RNA-based stable isotope probing
Wilfried Weigel, Markus Egert, Tatjana A. Engel, Helga Weinschrott, Andreas Fath The μAqua-Chip – a new tool to monitor water quality
Markus Egert Wie Präbiotika gesunde Mikroorganismen im Darm fördern

2014

Torsten Burkholz, Markus Egert, Claus Jacob Elektrochemische Dekontamination leitender Oberflächen: Von grundlegenden Ideen zu neuen Ansätzen
Markus Egert, Rainer Simmering, Bernhard Banowski, Roland Breves In Deo veritas — Entstehung und Verhinderung humanen Körpergeruchs
Elena Herrmann, Florian Ludwig, Christian U. Riedel, Markus Egert Optimization of RNA-based stable isotope probing to link structure and function of microbial communities in the intestinal tract of mice
Elena Herrmann, Florian Ludwig, Christian U. Riedel, Markus Egert Optimization of RNA-based stable isotope probing to link structure and function of microbial communities in the intestinal tract of mice
Christian U. Riedel, Andreas Schwiertz, Markus Egert The Stomach and Small and Large Intestinal Microbiomes
Elena Herrmann, Florian Ludwig, Christian U. Riedel, Markus Egert Using RNA-based stable isotope probing to identify prebiotics-degrading micro organisms in the intestinal tract of mice and men
Kerstin Späth, Karoline Weik, Heike Kunzelmann, Christian Horn, Matthias Kohl, Frithjof Blessing, Markus Egert You will never talk alone: Bacteria on smartphone touchscreens in a German university setting and evaluation of two popular cleaning methods

2013

Markus Egert, Heide-Marie Höhne, T. Weber, Rainer Simmering, Bernhard Banowski, Roland Breves Identification of compounds inhibiting the C-S lyase activity of a cell extract from a Staphylococcus sp. isolated from human skin
Irene Köhnen, Stefanie Kupferer, Frithjof Blessing, Markus Egert Scary meat? – Occurrence of antibiotic resistant bacteria (MRSA, ESBL) on conventional and organic retail meat samples in the greater area of Villingen-Schwenningen Germany

2012

Markus Egert From academia to industry, and back: Microbiological research to make life easier, better and more beautiful
Markus Egert Leben auf dem Menschen - Neues zur Hautflora des Menschen

2011

Martin Schmitt, Katrin Schmidt, Markus Egert, Gerhard Lindner To hear microbes settling down – online detection of microbial biofilm formation by means of acoustic lamb waves
Markus Egert, Inke Schmidt, Heide-Marie Höhne, Tim Lachnit, Ruth A. Schmitz, Roland Breves rRNA-based profiling of bacteria in the axilla of healthy males suggests right left asymmetry in bacterial activity

2010

Markus Egert, Irmgard Schmidt, Kevin Bussey, Roland Breves A glimpse under the rim – the composition of microbial biofilm communities in domestic toilets

2009

Petia Kovatcheva-Datchary, Markus Egert, Annet Maathuis, Mirjana Rajilic-Stojanovic, Alber A. de Graaf, Hauke Smidt, Willem M. de Vos, Koen Venema Linking phylogenetic identities of bacteria to starch fermentation in an in-vitro model of the large intestine by RNA-based stable isotope probing

2008

Susana Fuentes, Markus Egert, Maria Jimenez-Valera, Alberto Ramos-Cormenzana, Alfonso Ruiz-Bravo, Hauke Smidt, Mercedes Monteoliva-Sanchez Administration of Lactobacillus casei and Lactobacillus plantarum affects the diversity of murine intestinal lactobacilli, but not the overall bacterial community structure

2007

Susana Fuentes, Markus Egert, Maria Jimenez-Valera, Mercedes Monteoliva-Sanchez, Alfonso Ruiz-Bravo, Hauke Smidt A strain of Lactobacillus plantarum affects segmented filamentous bacteria in the intestine of immunosuppressed mice
Markus Egert, Albert A. de Graaf, Annet Maathuis, Pieter de Waard, Caroline M. Plugge, Hauke Smidt, Nicolaas E. Deutz, Cor Dijkema, Willem M. de Vos, Koen Venema Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing

2006

Markus Egert, Albert A. de Graaf, Hauke Smidt, Willem M. de Vos, Koen Venema Beyond diversity: Functional microbiomics of the human colon

2005

Markus Egert, Michael W. Friedrich Post-amplification Klenow fragment treatment alleviates PCR bias caused by partially single-stranded amplicons
Markus Egert, Ulrich Stingl, Lars Dyhrberg Bruun, Bianca Pommerenke, Andreas Brune, Michael W. Friedrich Structure and Topology of Microbial Communities in the Major Gut Compartments of Melolontha melolontha Larvae (Coleoptera: Scarabaeidae)

2004

Markus Egert, Sven Marhan, Bianca Wagner, Stefan Scheu, Michael W. Friedrich Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae)

2003

Markus Egert, Michael W. Friedrich Formation of Pseudo-Terminal Restriction Fragments, a PCR-Related Bias Affecting Terminal Restriction Fragment Length Polymorphism Analysis of Microbial Community Structure
Markus Egert, Manfred Tevini Influence of Ultraviolet-B Radiation on Peroxidase Activity of Allium schoenoprasum Leaves
Markus Egert, Bianca Wagner, Thorsten Lemke, Andreas Brune, Michael W. Friedrich Microbial Community Structure in Midgut and Hindgut of the Humus-Feeding Larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae)
Thorsten Lemke, Ulrich Stingl, Markus Egert, Michael W. Friedrich, Andreas Brune Physicochemical Conditions and Microbial Activities in the Highly Alkaline Gut of the Humus-Feeding Larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae)
Markus Egert Struktur und räumliche Verteilung mikrobieller Gemeinschaften im Verdauungstrakt ausgewählter Boden-Invertebraten

2002

Markus Egert, Manfred Tevini Influence of drought on some physiological parameters symptomatic for oxidative stress in leaves of chives (Allium schoenoprasum)

2001

Markus Egert, Eckhard Jedicke Akzeptanz von Windenergieanlagen: Ergebnisse einer Anwohnerbefragung unter besonderer Berücksichtigung der Beeinflussung des Landschaftsbildes